IL_1KQS_009

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1KQS|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_009 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.0288

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

1KQS|1|0|A|248
1KQS|1|0|G|249
*
1KQS|1|0|C|260
1KQS|1|0|A|261
1KQS|1|0|A|262
1KQS|1|0|U|263
1KQS|1|0|G|264
1KQS|1|0|U|265

Current chains

Chain 0

23S RRNA

Nearby chains

Chain F

RIBOSOMAL PROTEIN L7AE

Chain L

RIBOSOMAL PROTEIN L15E