IL_1KQS_016

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UACAAG*CGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_016 not in the Motif Atlas

Homologous match to IL_4V9F_015

Geometric discrepancy: 0.032

The information below is about IL_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59302.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

1KQS|1|0|U|548
1KQS|1|0|A|549
1KQS|1|0|C|550
1KQS|1|0|A|551
1KQS|1|0|A|552
1KQS|1|0|G|553
*
1KQS|1|0|C|606
1KQS|1|0|G|607
1KQS|1|0|A|608

Current chains

Chain 0

23S RRNA

Nearby chains

Chain X

RIBOSOMAL PROTEIN L32E