IL_1KQS_028

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_028 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0438

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1KQS|1|0|U|794
1KQS|1|0|G|795
1KQS|1|0|A|796
1KQS|1|0|A|797
1KQS|1|0|G|798
*
1KQS|1|0|U|815
1KQS|1|0|G|816
1KQS|1|0|G|817
1KQS|1|0|A|818
1KQS|1|0|A|819

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain O

RIBOSOMAL PROTEIN L19E

Chain Y

RIBOSOMAL PROTEIN L37Ae