IL_1KQS_038

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAG*CGAGA

Length

10 nucleotides

Bulged bases

1KQS|1|0|G|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_038 not in the Motif Atlas

Homologous match to IL_4V9F_037

Geometric discrepancy: 0.0324

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

1KQS|1|0|U|1095
1KQS|1|0|U|1096
1KQS|1|0|A|1097
1KQS|1|0|A|1098
1KQS|1|0|G|1099
*
1KQS|1|0|C|1257
1KQS|1|0|G|1258
1KQS|1|0|A|1259
1KQS|1|0|G|1260
1KQS|1|0|A|1261

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain V

RIBOSOMAL PROTEIN L30

Chain X

RIBOSOMAL PROTEIN L32E