IL_1KQS_046

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GACG

Length

7 nucleotides

Bulged bases

1KQS|1|0|A|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_046 not in the Motif Atlas

Geometric match to IL_4V9F_046

Geometric discrepancy: 0.042

The information below is about IL_4V9F_046

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

1KQS|1|0|C|1301
1KQS|1|0|G|1302
1KQS|1|0|C|1303
*
1KQS|1|0|G|1351
1KQS|1|0|A|1352
1KQS|1|0|C|1353
1KQS|1|0|G|1354

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain K

RIBOSOMAL PROTEIN L15

Chain X

RIBOSOMAL PROTEIN L32E