IL_1KQS_062

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUCGG*CUGU

Length

10 nucleotides

Bulged bases

1KQS|1|0|G|2033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_062 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.0413

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

1KQS|1|0|A|1747
1KQS|1|0|U|1748
1KQS|1|0|U|1749
1KQS|1|0|C|1750
1KQS|1|0|G|1751
1KQS|1|0|G|1752
*
1KQS|1|0|C|2031
1KQS|1|0|U|2032
1KQS|1|0|G|2033
1KQS|1|0|U|2034

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14