IL_1KQS_081

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_081 not in the Motif Atlas

Geometric match to IL_4V9F_083

Geometric discrepancy: 0.0528

The information below is about IL_4V9F_083

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

20

Unit IDs

1KQS|1|0|U|2492
1KQS|1|0|C|2493
1KQS|1|0|G|2494
*
1KQS|1|0|U|2528
1KQS|1|0|G|2529

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 3

CCA

Chain 4

CC-Pmn-pcb

Chain H

RIBOSOMAL PROTEIN L10E