IL_1KQS_088

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1KQS|1|0|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_088 not in the Motif Atlas

Geometric match to IL_5J7L_344

Geometric discrepancy: 0.1835

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

1KQS|1|0|C|2626
1KQS|1|0|G|2627
*
1KQS|1|0|C|2636
1KQS|1|0|A|2637
1KQS|1|0|G|2638

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 3

CCA

Chain 4

CC-Pmn-pcb

Chain A

RIBOSOMAL PROTEIN L2