IL_1M1K_018

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCG*CACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_018 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.206

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1M1K|1|A|C|558
1M1K|1|A|U|559
1M1K|1|A|C|560
1M1K|1|A|G|561
*
1M1K|1|A|C|596
1M1K|1|A|A|597
1M1K|1|A|C|598
1M1K|1|A|G|599

Current chains

Chain A

23S RRNA

Nearby chains

Chain Z

RIBOSOMAL PROTEIN L32E