IL_1M1K_050

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_050 not in the Motif Atlas

Homologous match to IL_4V9F_050

Geometric discrepancy: 0.0484

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

1M1K|1|A|G|1416
1M1K|1|A|G|1417
1M1K|1|A|U|1418
1M1K|1|A|U|1419
*
1M1K|1|A|A|1678
1M1K|1|A|C|1679

Current chains

Chain A

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L37E

Chain 3

RIBOSOMAL PROTEIN L39E

Chain T

RIBOSOMAL PROTEIN L23