IL_1M1K_052

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAAUG

Length

12 nucleotides

Bulged bases

1M1K|1|A|A|1486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_052 not in the Motif Atlas

Homologous match to IL_4V9F_052

Geometric discrepancy: 0.0367

The information below is about IL_4V9F_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_70627.3

Basepair signature

cWW-L-R-tHW-cWW

Number of instances in this motif group

3

Unit IDs

1M1K|1|A|C|1456
1M1K|1|A|U|1457
1M1K|1|A|A|1458
1M1K|1|A|A|1459
1M1K|1|A|G|1460
*
1M1K|1|A|C|1483
1M1K|1|A|G|1484
1M1K|1|A|A|1485
1M1K|1|A|A|1486
1M1K|1|A|A|1487
1M1K|1|A|U|1488
1M1K|1|A|G|1489

Current chains

Chain A

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L37E

Chain 3

RIBOSOMAL PROTEIN L39E

Chain C

RIBOSOMAL PROTEIN L2