IL_1M1K_092

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

1M1K|1|A|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_092 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.0444

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

1M1K|1|A|U|2724
1M1K|1|A|G|2725
1M1K|1|A|U|2726
1M1K|1|A|A|2727
1M1K|1|A|C|2728
*
1M1K|1|A|G|2754
1M1K|1|A|G|2755
1M1K|1|A|U|2756
1M1K|1|A|A|2757
1M1K|1|A|G|2758

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain V

RIBOSOMAL PROTEIN L24E

Chain Y

RIBOSOMAL PROTEIN L31E