IL_1M5L_017

3D structure

PDB id

1M5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of wild-type and mutant internal loops from the SL-1 domain of the HIV-1 packaging signal

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAGGAC*GGGG

Length

10 nucleotides

Bulged bases

1M5L|9|A|G|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M5L|9|A|C|4
1M5L|9|A|A|5
1M5L|9|A|G|6
1M5L|9|A|G|7
1M5L|9|A|A|8
1M5L|9|A|C|9
*
1M5L|9|A|G|32
1M5L|9|A|G|33
1M5L|9|A|G|34
1M5L|9|A|G|35

Current chains

Chain A

modified HIV-1 packaging signal stem-loop 1 RNA

Nearby chains