IL_1M5P_003

3D structure

PDB id

1M5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transition State Stabilization by a Catalytic RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M5P_003 not in the Motif Atlas

Geometric match to IL_1KFO_003

Geometric discrepancy: 0.1723

The information below is about IL_1KFO_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

1M5P|1|B|G|72
1M5P|1|B|G|73
1M5P|1|B|G|74
*
1M5P|1|B|C|79
1M5P|1|B|U|80
1M5P|1|B|U|81

Current chains

Chain B

RNA HAIRPIN RIBOZYME

Nearby chains