IL_1M5V_002
3D structure
- PDB id
- 1M5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Transition State Stabilization by a Catalytic RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GAGAAACAC*GGUAUAUUACC
- Length
- 20 nucleotides
- Bulged bases
- 1M5V|1|B|U|56, 1M5V|1|B|U|58
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1M5V_002 not in the Motif Atlas
- Geometric match to IL_1M5K_003
- Geometric discrepancy: 0.0783
- The information below is about IL_1M5K_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60797.1
- Basepair signature
- cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1M5V|1|B|G|19
1M5V|1|B|A|20
1M5V|1|B|G|21
1M5V|1|B|A|22
1M5V|1|B|A|23
1M5V|1|B|A|24
1M5V|1|B|C|25
1M5V|1|B|A|26
1M5V|1|B|C|27
*
1M5V|1|B|G|54
1M5V|1|B|G|55
1M5V|1|B|U|56
1M5V|1|B|A|57
1M5V|1|B|U|58
1M5V|1|B|A|59
1M5V|1|B|U|60
1M5V|1|B|U|61
1M5V|1|B|A|62
1M5V|1|B|C|63
1M5V|1|B|C|64
Current chains
- Chain B
- RNA HAIRPIN RIBOZYME
Nearby chains
- Chain A
- RNA INHIBITOR SUBSTRATE
- Chain M
- RNA INHIBITOR SUBSTRATE
Coloring options: