IL_1M90_009

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1M90|1|A|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_009 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.0335

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

1M90|1|A|A|248
1M90|1|A|G|249
*
1M90|1|A|C|260
1M90|1|A|A|261
1M90|1|A|A|262
1M90|1|A|U|263
1M90|1|A|G|264
1M90|1|A|U|265

Current chains

Chain A

23S RRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN L7AE

Chain N

RIBOSOMAL PROTEIN L15E