3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1M90_024 not in the Motif Atlas
Homologous match to IL_4V9F_023
Geometric discrepancy: 0.0256
The information below is about IL_4V9F_023
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

1M90|1|A|C|763
1M90|1|A|C|764
1M90|1|A|G|765
*
1M90|1|A|C|899
1M90|1|A|U|900
1M90|1|A|G|901

Current chains

Chain A
23S RRNA

Nearby chains

Chain E
RIBOSOMAL PROTEIN L4
Chain M
RIBOSOMAL PROTEIN L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0664 s