IL_1M90_055

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_055 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0359

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1M90|1|A|G|1542
1M90|1|A|G|1543
1M90|1|A|U|1544
1M90|1|A|C|1545
1M90|1|A|G|1546
*
1M90|1|A|U|1639
1M90|1|A|C|1640
1M90|1|A|A|1641
1M90|1|A|A|1642
1M90|1|A|C|1643

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E