IL_1M90_066

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

1M90|1|A|C|1894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_066 not in the Motif Atlas

Homologous match to IL_4V9F_066

Geometric discrepancy: 0.0307

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

1M90|1|A|C|1893
1M90|1|A|C|1894
1M90|1|A|A|1895
1M90|1|A|G|1896
*
1M90|1|A|C|1943
1M90|1|A|G|1944

Current chains

Chain A

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L2