IL_1M90_079

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_079 not in the Motif Atlas

Homologous match to IL_4V9F_081

Geometric discrepancy: 0.04

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

1M90|1|A|U|2436
1M90|1|A|A|2437
1M90|1|A|G|2438
*
1M90|1|A|C|2454
1M90|1|A|A|2455

Current chains

Chain A

23S RRNA

Nearby chains

Chain 4

RIBOSOMAL PROTEIN L44E

Chain M

RIBOSOMAL PROTEIN L15