IL_1M90_083

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_083 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.0912

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

1M90|1|A|G|2494
1M90|1|A|U|2495
1M90|1|A|C|2496
*
1M90|1|A|G|2524
1M90|1|A|G|2525
1M90|1|A|C|2526
1M90|1|A|U|2527
1M90|1|A|U|2528

Current chains

Chain A

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L10E