IL_1M90_100

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1M90|1|B|A|3065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_100 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.0998

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

1M90|1|B|C|3015
1M90|1|B|G|3016
*
1M90|1|B|C|3064
1M90|1|B|A|3065
1M90|1|B|G|3066

Current chains

Chain B

5S RRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

RIBOSOMAL PROTEIN L5

Chain O

RIBOSOMAL PROTEIN L18