IL_1M90_106
3D structure
- PDB id
- 1M90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAG*CAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 1M90|1|A|U|263
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1M90_106 not in the Motif Atlas
- Homologous match to IL_4V9F_108
- Geometric discrepancy: 0.025
- The information below is about IL_4V9F_108
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_33886.1
- Basepair signature
- cWW-L-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
1M90|1|A|C|245
1M90|1|A|G|246
1M90|1|A|A|247
1M90|1|A|A|248
1M90|1|A|G|249
*
1M90|1|A|C|260
1M90|1|A|A|261
1M90|1|A|A|262
1M90|1|A|U|263
1M90|1|A|G|264
1M90|1|A|U|265
1M90|1|A|G|266
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain H
- RIBOSOMAL PROTEIN L7AE
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: