IL_1MMS_002

3D structure

PDB id

1MMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosomal PROTEIN L11-RNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.57 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

1MMS|1|C|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

1MMS|1|C|G|1087
1MMS|1|C|A|1088
1MMS|1|C|G|1089
1MMS|1|C|U|1090
1MMS|1|C|G|1091
*
1MMS|1|C|C|1100
1MMS|1|C|U|1101
1MMS|1|C|C|1102

Current chains

Chain C

23S RIBOSOMAL RNA

Nearby chains

Chain A

PROTEIN (RIBOSOMAL PROTEIN L11)