IL_1MNB_002

3D structure

PDB id

1MNB (explore in PDB, NAKB, or RNA 3D Hub)

Description

BIV TAT PEPTIDE (RESIDUES 68-81), NMR, MINIMIZED AVERAGE STRUCTURE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

1MNB|1|B|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1MNB_002 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.3806

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

1MNB|1|B|G|8
1MNB|1|B|U|9
1MNB|1|B|A|10
*
1MNB|1|B|U|21
1MNB|1|B|C|22

Current chains

Chain B

BIV TAR RNA

Nearby chains

Chain A

BIV TAT PEPTIDE