IL_1N33_008

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

1N33|1|A|G|129|||A, 1N33|1|A|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N33_008 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1055

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

1N33|1|A|U|129
1N33|1|A|G|129|||A
1N33|1|A|A|130
1N33|1|A|C|131
*
1N33|1|A|G|231
1N33|1|A|G|232

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20