IL_1N33_035

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N33_035 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0686

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1N33|1|A|C|779
1N33|1|A|A|780
1N33|1|A|A|781
1N33|1|A|A|782
1N33|1|A|C|783
*
1N33|1|A|G|799
1N33|1|A|G|800
1N33|1|A|U|801
1N33|1|A|A|802
1N33|1|A|G|803

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11