IL_1N33_041

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N33_041 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.219

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

1N33|1|A|G|941
1N33|1|A|G|942
1N33|1|A|U|943
*
1N33|1|A|A|1340
1N33|1|A|U|1341
1N33|1|A|C|1342

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9