IL_1N33_045
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 1N33|1|A|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N33_045 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1883
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
1N33|1|A|U|1052
1N33|1|A|G|1053
1N33|1|A|C|1054
1N33|1|A|A|1055
1N33|1|A|U|1056
*
1N33|1|A|A|1204
1N33|1|A|U|1205
1N33|1|A|G|1206
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain Y
- ANTICODON STEM-LOOP OF SER TRANSFER RNA
- Chain Z
- A-SITE MESSENGER RNA FRAGMENT
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