IL_1N33_046

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGC*GUCAGC

Length

9 nucleotides

Bulged bases

1N33|1|A|C|1200, 1N33|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N33|1|A|G|1057
1N33|1|A|G|1058
1N33|1|A|C|1059
*
1N33|1|A|G|1198
1N33|1|A|U|1199
1N33|1|A|C|1200
1N33|1|A|A|1201
1N33|1|A|G|1202
1N33|1|A|C|1203

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14

Chain Y

ANTICODON STEM-LOOP OF SER TRANSFER RNA