IL_1N33_055

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N33_055 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2987

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

1N33|1|A|C|1259
1N33|1|A|C|1260
1N33|1|A|A|1261
1N33|1|A|C|1262
*
1N33|1|A|G|1273
1N33|1|A|G|1274
1N33|1|A|A|1275
1N33|1|A|G|1276

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain V

30S RIBOSOMAL PROTEIN THX