3D structure

PDB id
1N33 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
CGAUGCCAC*GGAGCUAAUCG
Length
20 nucleotides
Bulged bases
1N33|1|A|U|1257, 1N33|1|A|U|1278, 1N33|1|A|A|1280, 1N33|1|A|U|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1N33|1|A|C|1254
1N33|1|A|G|1255
1N33|1|A|A|1256
1N33|1|A|U|1257
1N33|1|A|G|1258
1N33|1|A|C|1259
1N33|1|A|C|1260
1N33|1|A|A|1261
1N33|1|A|C|1262
*
1N33|1|A|G|1273
1N33|1|A|G|1274
1N33|1|A|A|1275
1N33|1|A|G|1276
1N33|1|A|C|1277
1N33|1|A|U|1278
1N33|1|A|A|1279
1N33|1|A|A|1280
1N33|1|A|U|1281
1N33|1|A|C|1282
1N33|1|A|G|1283

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain C
30S RIBOSOMAL PROTEIN S3
Chain J
30S RIBOSOMAL PROTEIN S10
Chain N
30S RIBOSOMAL PROTEIN S14
Chain V
30S RIBOSOMAL PROTEIN THX

Coloring options:

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