IL_1N33_079

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

1N33|1|A|U|1125, 1N33|1|A|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N33|1|A|G|1124
1N33|1|A|U|1125
1N33|1|A|U|1126
1N33|1|A|G|1127
1N33|1|A|C|1128
1N33|1|A|C|1129
1N33|1|A|A|1130
1N33|1|A|G|1131
1N33|1|A|C|1132
*
1N33|1|A|G|1142
1N33|1|A|G|1143
1N33|1|A|G|1144
1N33|1|A|C|1145
1N33|1|A|A|1146
1N33|1|A|C|1147
1N33|1|A|U|1148
1N33|1|A|C|1149

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10