IL_1N34_036
3D structure
- PDB id
- 1N34 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAACC*GGGUAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N34_036 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.2923
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
1N34|1|A|C|779
1N34|1|A|A|780
1N34|1|A|A|781
1N34|1|A|A|782
1N34|1|A|C|783
1N34|1|A|C|784
*
1N34|1|A|G|798
1N34|1|A|G|799
1N34|1|A|G|800
1N34|1|A|U|801
1N34|1|A|A|802
1N34|1|A|G|803
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain K
- 30S RIBOSOMAL PROTEIN S11
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