IL_1N34_046
3D structure
- PDB id
- 1N34 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGC*GUCAGCA
- Length
- 11 nucleotides
- Bulged bases
- 1N34|1|A|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N34_046 not in the Motif Atlas
- Geometric match to IL_3BNR_008
- Geometric discrepancy: 0.3491
- The information below is about IL_3BNR_008
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_60988.2
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
1N34|1|A|U|1056
1N34|1|A|G|1057
1N34|1|A|G|1058
1N34|1|A|C|1059
*
1N34|1|A|G|1198
1N34|1|A|U|1199
1N34|1|A|C|1200
1N34|1|A|A|1201
1N34|1|A|G|1202
1N34|1|A|C|1203
1N34|1|A|A|1204
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14
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