IL_1N34_071

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCUACC*GAUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N34|1|A|C|131
1N34|1|A|C|132
1N34|1|A|U|133
1N34|1|A|A|134
1N34|1|A|C|135
1N34|1|A|C|136
*
1N34|1|A|G|227
1N34|1|A|A|228
1N34|1|A|U|229
1N34|1|A|G|230
1N34|1|A|G|231

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20