IL_1N8R_006
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAACUG*CUCAGUAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N8R_006 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.0516
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
1N8R|1|A|A|158
1N8R|1|A|G|159
1N8R|1|A|A|160
1N8R|1|A|A|161
1N8R|1|A|C|162
1N8R|1|A|U|163
1N8R|1|A|G|164
*
1N8R|1|A|C|171
1N8R|1|A|U|172
1N8R|1|A|C|173
1N8R|1|A|A|174
1N8R|1|A|G|175
1N8R|1|A|U|176
1N8R|1|A|A|177
1N8R|1|A|U|178
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L37e
- Chain 4
- 50S ribosomal protein L44E
- Chain M
- 50S ribosomal protein L15P
- Chain N
- 50S ribosomal protein L15E
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