IL_1N8R_012

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N8R_012 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2078

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

1N8R|1|A|C|287
1N8R|1|A|A|288
1N8R|1|A|G|289
1N8R|1|A|C|290
*
1N8R|1|A|G|362
1N8R|1|A|A|363
1N8R|1|A|C|364
1N8R|1|A|G|365

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15E