IL_1N8R_023

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N8R_023 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.0425

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1N8R|1|A|C|705
1N8R|1|A|G|706
1N8R|1|A|C|707
1N8R|1|A|A|708
1N8R|1|A|G|709
*
1N8R|1|A|C|719
1N8R|1|A|G|720
1N8R|1|A|A|721
1N8R|1|A|G|722
1N8R|1|A|G|723

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L18E