IL_1N8R_025
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAUC*GCAACAGC
- Length
- 13 nucleotides
- Bulged bases
- 1N8R|1|A|A|894, 1N8R|1|A|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N8R_025 not in the Motif Atlas
- Geometric match to IL_4V9F_024
- Geometric discrepancy: 0.0469
- The information below is about IL_4V9F_024
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
1N8R|1|A|G|765
1N8R|1|A|A|766
1N8R|1|A|A|767
1N8R|1|A|U|768
1N8R|1|A|C|769
*
1N8R|1|A|G|892
1N8R|1|A|C|893
1N8R|1|A|A|894
1N8R|1|A|A|895
1N8R|1|A|C|896
1N8R|1|A|A|897
1N8R|1|A|G|898
1N8R|1|A|C|899
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L37e
- Chain E
- 50S ribosomal protein L4E
- Chain M
- 50S ribosomal protein L15P
- Chain N
- 50S ribosomal protein L15E
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