IL_1N8R_082

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N8R_082 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.0959

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

1N8R|1|A|G|2494
1N8R|1|A|U|2495
1N8R|1|A|C|2496
*
1N8R|1|A|G|2524
1N8R|1|A|G|2525
1N8R|1|A|C|2526
1N8R|1|A|U|2527
1N8R|1|A|U|2528

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain J

50S ribosomal protein L10e