IL_1NJI_003

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCG*CAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJI_003 not in the Motif Atlas

Homologous match to IL_4V9F_003

Geometric discrepancy: 0.0305

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

1NJI|1|A|G|39
1NJI|1|A|C|40
1NJI|1|A|G|41
*
1NJI|1|A|C|440
1NJI|1|A|A|441
1NJI|1|A|A|442
1NJI|1|A|C|443

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain E

50S ribosomal protein L4E