IL_1NJI_016
3D structure
- PDB id
- 1NJI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of chloramphenicol bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UACAAG*CGA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NJI_016 not in the Motif Atlas
- Homologous match to IL_4V9F_015
- Geometric discrepancy: 0.0297
- The information below is about IL_4V9F_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59302.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
1NJI|1|A|U|548
1NJI|1|A|A|549
1NJI|1|A|C|550
1NJI|1|A|A|551
1NJI|1|A|A|552
1NJI|1|A|G|553
*
1NJI|1|A|C|606
1NJI|1|A|G|607
1NJI|1|A|A|608
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Z
- 50S ribosomal protein L32E
Coloring options: