IL_1NJI_108
3D structure
- PDB id
- 1NJI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of chloramphenicol bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGAAUUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NJI_108 not in the Motif Atlas
- Homologous match to IL_4V9F_111
- Geometric discrepancy: 0.0279
- The information below is about IL_4V9F_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
1NJI|1|A|G|1744
1NJI|1|A|G|1745
1NJI|1|A|A|1746
1NJI|1|A|A|1747
1NJI|1|A|U|1748
1NJI|1|A|U|1749
1NJI|1|A|C|1750
1NJI|1|A|G|1751
1NJI|1|A|G|1752
*
1NJI|1|A|C|2031
1NJI|1|A|U|2032
1NJI|1|A|G|2033
1NJI|1|A|U|2034
1NJI|1|A|C|2035
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain L
- 50S ribosomal protein L14P
Coloring options: