IL_1NJM_027

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGUU*AG

Length

6 nucleotides

Bulged bases

1NJM|1|0|G|858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_027 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2254

The information below is about IL_4V9F_021

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

1NJM|1|0|U|857
1NJM|1|0|G|858
1NJM|1|0|U|859
1NJM|1|0|U|860
*
1NJM|1|0|A|944
1NJM|1|0|G|945

Current chains

Chain 0

23S ribosomal RNA

Nearby chains