IL_1NJM_040

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

1NJM|1|0|C|1152, 1NJM|1|0|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_040 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.4082

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1NJM|1|0|C|1029
1NJM|1|0|U|1030
1NJM|1|0|C|1031
1NJM|1|0|A|1032
1NJM|1|0|G|1033
1NJM|1|0|U|1034
1NJM|1|0|G|1035
*
1NJM|1|0|C|1150
1NJM|1|0|U|1151
1NJM|1|0|C|1152
1NJM|1|0|A|1153
1NJM|1|0|A|1154
1NJM|1|0|G|1155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains