IL_1NJM_053

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_053 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.2072

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1NJM|1|0|A|1275
1NJM|1|0|U|1276
1NJM|1|0|G|1277
1NJM|1|0|A|1278
1NJM|1|0|G|1279
1NJM|1|0|U|1280
1NJM|1|0|A|1281
1NJM|1|0|A|1282
*
1NJM|1|0|U|1994
1NJM|1|0|G|1995
1NJM|1|0|A|1996
1NJM|1|0|A|1997
1NJM|1|0|A|1998
1NJM|1|0|U|1999
1NJM|1|0|U|2000

Current chains

Chain 0

23S ribosomal RNA

Nearby chains