IL_1NJM_073

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1NJM|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_073 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.299

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1NJM|1|0|C|1703
1NJM|1|0|G|1704
1NJM|1|0|U|1705
1NJM|1|0|A|1706
1NJM|1|0|A|1707
1NJM|1|0|C|1708
*
1NJM|1|0|G|1713
1NJM|1|0|A|1714
1NJM|1|0|A|1715
1NJM|1|0|G|1716
1NJM|1|0|A|1717
1NJM|1|0|A|1718
1NJM|1|0|G|1719

Current chains

Chain 0

23S ribosomal RNA

Nearby chains