IL_1NJM_076

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1NJM|1|0|G|1790, 1NJM|1|0|C|1792, 1NJM|1|0|C|1808, 1NJM|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_076 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.3402

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1NJM|1|0|U|1789
1NJM|1|0|G|1790
1NJM|1|0|C|1791
1NJM|1|0|C|1792
1NJM|1|0|A|1793
1NJM|1|0|A|1794
1NJM|1|0|C|1795
*
1NJM|1|0|G|1805
1NJM|1|0|G|1806
1NJM|1|0|A|1807
1NJM|1|0|C|1808
1NJM|1|0|G|1809
1NJM|1|0|U|1810
1NJM|1|0|A|1811
1NJM|1|0|U|1812
1NJM|1|0|A|1813

Current chains

Chain 0

23S ribosomal RNA

Nearby chains