IL_1NJM_089

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

1NJM|1|0|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_089 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.1744

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1NJM|1|0|U|2064
1NJM|1|0|A|2065
1NJM|1|0|G|2066
*
1NJM|1|0|C|2215
1NJM|1|0|G|2216
1NJM|1|0|G|2217
1NJM|1|0|G|2218

Current chains

Chain 0

23S ribosomal RNA

Nearby chains